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Roughly speaking, three types of data will be kept, public biological sequence and related data, MiSeq data and Analized data.
Highest priority: Usage for MACH project by the project members.
User | Family name | First name | Secondary groups | Note |
bioadmin | | | | to install bioinformatic tools without using root by using su/sudo |
joaquin | Rilling | Joaquin | fuse, machanal |
so | Fujiyoshi | So | fuse, machanal |
mickey | Kawai | Mikihiko | fuse, machanal |
fumito | Maruyama | Fumito | machanal | |
satoshi | Nagai | Satoshi | machanal | |
kyoko | Yarimizu | Kyoko | machanal | |
shoko | Ueki | Shoko | machanal | |
Date created | Group name | Purpose | Note |
20191001? | fuse | To mount basemount for getting raw gigabase-order raw sequence files of Illumina MiSeq from Illumina's BaseSpace | probably set by default setting of os |
20191001? | machanal | To share analyzed data among members of project MACH (e.g. at /data/mach/) |
not yet | machdb | | |
not yet | machweb | | |
not yet | machmodel | | |
Group | Assigned user |
machanal | joaquin |
machanal | so |
machanal | mickey |
machanal | fumito |
machanal | satoshi |
machanal | kyoko |
machanal | shoko |
| |
fuse | joaquin |
fuse | so |
fuse | mickey |
Path | Permission | Purpose | Size |
/data/ | 775 (root-research) | | 20TB |
/data/<project>/ | 2770 (<project>-research) | To keep data shared among users of the project | |
/data/<project>/<user>/ | 2750 | To keep data analyzed by the user of the project | |
List of projects
Project | Group | User | Last name | First name |
mach | machanal | joaquin | Joaqui | Rilling |
mach | machanal | so | So | Fujiyoshi |
mach | machanal | mickey | Mikihiko | Kawai |
ao | name_ao | kei | Kei | Yoshimura |
ao | name_ao | fumiaki | Fumiaki | Morimoto |
ao | name_ao | xiaojun | Xiaojun | name |
For directories of tools and public databases of biological data
Path | Permission | Purpose | Size |
/bio | 775 (bioadmin-bioadmin) | | 25TB |
/bio/bin | | | |
/bio/package | | | |
/bio/package/<tool>/<version> | | | |
/bio/db | | | |
Group | Assigned user |
machanal | joaquin |
machanal | so |
machanal | mickey |
machanal | fumito |
machanal | satoshi |
machanal | kyoko |
machanal | shoko |
fuse | joaquin |
fuse | so |
fuse | mickey |
Path | Permission | Purpose |
/data/ | 775 (root-research) | |
/data/<project>/ | 2770 (<project>-research) | To keep data shared among users of the project |
/data/<project>/<user>/ | 2750 | To keep data analyzed by the user of the project |
* /data can be other path, for example, /home/proj
* <user> belongs to a group, of which name for the <project> may be simply the same as <project>, but can be different.
List of projects
Project | Group | User |
mach | machanal | joaquin |
mach | machanal | so |
mach | machanal | mickey |
For directories of tools and public databases of biological data
Path | Permission | Purpose | Size |
/bio | 775 (bioadmin-bioadmin) | | 25TB |
/bio/bin | | | |
/bio/db | | | |
/bio/package | | | |
/bio/package/<tool>/<version> | | | |
Priority | Group name of priviledge | Purpose | Note | |
High | mach | Usage for MACH project by the project members. | Distribute evenly among users (e.g. for biological analysis and for simulation) (by ticket, nice value etc. on SLURM) | |
machcolab | Coollaborative studies by MACH members | | | |
ufro-internal | Need to submit user form (e.g. Name, affiliation, purpose of usage, desired account if any) | | |
Low | external | Need to submit user form (e.g. Name, affiliation, purpose of usage, desired account if any) | | |
Queue name | Duration of one job | Memory per job | | |
small | 6hr | | medium | 72hr |
Group of priviledge | Number of simultaneous jobs | | | |
default | e.g. 30? | | | |
Submit an application form if one wants to request large resources, say, storage, memory per queue, number of similutaneously running queues/cpu.
Roughly speaking, three types of data will be kept, public biological sequence and related data, MiSeq data and Analized data.
Highest priority: Usage for MACH project by the project members.
User | Family name | First name | Secondary groups | Note |
bioadmin | | | | to install bioinformatic tools without using root by using su/sudo |
joaquin | Rilling | Joaquin | fuse, machanal |
so | Fujiyoshi | So | fuse, machanal |
mickey | Kawai | Mikihiko | fuse, machanal |
fumito | Maruyama | Fumito | machanal | |
satoshi | Nagai | Satoshi | machanal | |
kyoko | Yarimizu | Kyoko | machanal | |
shoko | Ueki | Shoko | machanal | |
Date created | Group name | Purpose | Note |
20191001? | fuse | To mount basemount for getting raw gigabase-order raw sequence files of Illumina MiSeq from Illumina's BaseSpace | probably set by default setting of os |
20191001? | machanal | To share analyzed data among members of project MACH (e.g. at /data/mach/) |
not yet | machdb | | |
not yet | machweb | | |
not yet | machmodel | | |
Group | Assigned user |
machanal | joaquin |
machanal | so |
machanal | mickey |
machanal | fumito |
machanal | satoshi |
machanal | kyoko |
machanal | shoko |
| |
fuse | joaquin |
fuse | so |
fuse | mickey |
Path | Permission | Purpose | Size |
/data/ | 775 (root-research) | | 20TB |
/data/<project>/ | 2770 (<project>-research) | To keep data shared among users of the project | |
/data/<project>/<user>/ | 2750 | To keep data analyzed by the user of the project | |
List of projects
Project | Group | User | Last name | First name |
mach | machanal | joaquin | Joaqui | Rilling |
mach | machanal | so | So | Fujiyoshi |
mach | machanal | mickey | Mikihiko | Kawai |
ao | name_ao | kei | Kei | Yoshimura |
ao | name_ao | fumiaki | Fumiaki | Morimoto |
ao | name_ao | xiaojun | Xiaojun | name |
For directories of tools and public databases of biological data
Path | Permission | Purpose | Size |
/bio | 775 (bioadmin-bioadmin) | | 25TB |
/bio/bin | | | |
/bio/package | | | |
/bio/package/<tool>/<version> | | | |
/bio/db | | | |
Group | Assigned user |
machanal | joaquin |
machanal | so |
machanal | mickey |
machanal | fumito |
machanal | satoshi |
machanal | kyoko |
machanal | shoko |
fuse | joaquin |
fuse | so |
fuse | mickey |
Path | Permission | Purpose |
/data/ | 775 (root-research) | |
/data/<project>/ | 2770 (<project>-research) | To keep data shared among users of the project |
/data/<project>/<user>/ | 2750 | To keep data analyzed by the user of the project |
* /data can be other path, for example, /home/proj * <user> belongs to a group, of which name for the <project> may be simply the same as <project>, but can be different.
List of projects
Project | Group | User |
mach | machanal | joaquin |
mach | machanal | so |
mach | machanal | mickey |
For directories of tools and public databases of biological data
Path | Permission | Purpose | Size |
/bio | 775 (bioadmin-bioadmin) | | 25TB |
/bio/bin | | | |
/bio/db | | | |
/bio/package | | | |
/bio/package/<tool>/<version> | | | |
Priority | Group name of priviledge | Purpose | Note | |
High | mach | Usage for MACH project by the project members. | Distribute evenly among users (e.g. for biological analysis and for simulation) (by ticket, nice value etc. on SLURM) | |
machcolab | Coollaborative studies by MACH members | | | |
ufro-internal | Need to submit user form (e.g. Name, affiliation, purpose of usage, desired account if any) | | |
Low | external | Need to submit user form (e.g. Name, affiliation, purpose of usage, desired account if any) | | |
| Disk quote per user |
default | 500GB |
Queue name | Duration of one job | Memory per job | | |
small | 6hr | | medium | 72hr |
Group of priviledge | Number of simultaneous jobs | | | |
default | e.g. 30? | | | |
Submit an application form if one wants to request large resources, say, storage, memory per queue, number of similutaneously running queues/cpu.
MACH Meeting about soroban