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Roughly speaking, three types of data will be kept, public biological sequence and related data, MiSeq data and Analized data.
Highest priority: Usage for MACH project by the project members.
| User | Family name | First name | Secondary groups | Note |
| bioadmin | | | | to install bioinformatic tools without using root by using su/sudo |
| joaquin | Rilling | Joaquin | fuse, machanal |
| so | Fujiyoshi | So | fuse, machanal |
| mickey | Kawai | Mikihiko | fuse, machanal |
| fumito | Maruyama | Fumito | machanal | |
| satoshi | Nagai | Satoshi | machanal | |
| kyoko | Yarimizu | Kyoko | machanal | |
| shoko | Ueki | Shoko | machanal | |
| Date created | Group name | Purpose | Note |
| 20191001? | fuse | To mount basemount for getting raw gigabase-order raw sequence files of Illumina MiSeq from Illumina's BaseSpace | probably set by default setting of os |
| 20191001? | machanal | To share analyzed data among members of project MACH (e.g. at /data/mach/) |
| not yet | machdb | | |
| not yet | machweb | | |
| not yet | machmodel | | |
| Group | Assigned user |
| machanal | joaquin |
| machanal | so |
| machanal | mickey |
| machanal | fumito |
| machanal | satoshi |
| machanal | kyoko |
| machanal | shoko |
| | |
| fuse | joaquin |
| fuse | so |
| fuse | mickey |
| Path | Permission | Purpose | Size |
| /data/ | 775 (root-research) | | 20TB |
| /data/<project>/ | 2770 (<project>-research) | To keep data shared among users of the project | |
| /data/<project>/<user>/ | 2750 | To keep data analyzed by the user of the project | |
List of projects
| Project | Group | User | Last name | First name |
| mach | machanal | joaquin | Joaqui | Rilling |
| mach | machanal | so | So | Fujiyoshi |
| mach | machanal | mickey | Mikihiko | Kawai |
| ao | name_ao | kei | Kei | Yoshimura |
| ao | name_ao | fumiaki | Fumiaki | Morimoto |
| ao | name_ao | xiaojun | Xiaojun | name |
For directories of tools and public databases of biological data
| Path | Permission | Purpose | Size |
| /bio | 775 (bioadmin-bioadmin) | | 25TB |
| /bio/bin | | | |
| /bio/package | | | |
| /bio/package/<tool>/<version> | | | |
| /bio/db | | | |
| Group | Assigned user |
| machanal | joaquin |
| machanal | so |
| machanal | mickey |
| machanal | fumito |
| machanal | satoshi |
| machanal | kyoko |
| machanal | shoko |
| fuse | joaquin |
| fuse | so |
| fuse | mickey |
| Path | Permission | Purpose |
| /data/ | 775 (root-research) | |
| /data/<project>/ | 2770 (<project>-research) | To keep data shared among users of the project |
| /data/<project>/<user>/ | 2750 | To keep data analyzed by the user of the project |
* /data can be other path, for example, /home/proj
* <user> belongs to a group, of which name for the <project> may be simply the same as <project>, but can be different.
List of projects
| Project | Group | User |
| mach | machanal | joaquin |
| mach | machanal | so |
| mach | machanal | mickey |
For directories of tools and public databases of biological data
| Path | Permission | Purpose | Size |
| /bio | 775 (bioadmin-bioadmin) | | 25TB |
| /bio/bin | | | |
| /bio/db | | | |
| /bio/package | | | |
| /bio/package/<tool>/<version> | | | |
| Priority | Group name of priviledge | Purpose | Note | |
| High | mach | Usage for MACH project by the project members. | Distribute evenly among users (e.g. for biological analysis and for simulation) (by ticket, nice value etc. on SLURM) | |
| machcolab | Coollaborative studies by MACH members | | | |
| ufro-internal | Need to submit user form (e.g. Name, affiliation, purpose of usage, desired account if any) | | |
| Low | external | Need to submit user form (e.g. Name, affiliation, purpose of usage, desired account if any) | | |
| Queue name | Duration of one job | Memory per job | | |
| small | 6hr | | medium | 72hr |
| Group of priviledge | Number of simultaneous jobs | | | |
| default | e.g. 30? | | | |
Submit an application form if one wants to request large resources, say, storage, memory per queue, number of similutaneously running queues/cpu.
Roughly speaking, three types of data will be kept, public biological sequence and related data, MiSeq data and Analized data.
Highest priority: Usage for MACH project by the project members.
| User | Family name | First name | Secondary groups | Note |
| bioadmin | | | | to install bioinformatic tools without using root by using su/sudo |
| joaquin | Rilling | Joaquin | fuse, machanal |
| so | Fujiyoshi | So | fuse, machanal |
| mickey | Kawai | Mikihiko | fuse, machanal |
| fumito | Maruyama | Fumito | machanal | |
| satoshi | Nagai | Satoshi | machanal | |
| kyoko | Yarimizu | Kyoko | machanal | |
| shoko | Ueki | Shoko | machanal | |
| Date created | Group name | Purpose | Note |
| 20191001? | fuse | To mount basemount for getting raw gigabase-order raw sequence files of Illumina MiSeq from Illumina's BaseSpace | probably set by default setting of os |
| 20191001? | machanal | To share analyzed data among members of project MACH (e.g. at /data/mach/) |
| not yet | machdb | | |
| not yet | machweb | | |
| not yet | machmodel | | |
| Group | Assigned user |
| machanal | joaquin |
| machanal | so |
| machanal | mickey |
| machanal | fumito |
| machanal | satoshi |
| machanal | kyoko |
| machanal | shoko |
| | |
| fuse | joaquin |
| fuse | so |
| fuse | mickey |
| Path | Permission | Purpose | Size |
| /data/ | 775 (root-research) | | 20TB |
| /data/<project>/ | 2770 (<project>-research) | To keep data shared among users of the project | |
| /data/<project>/<user>/ | 2750 | To keep data analyzed by the user of the project | |
List of projects
| Project | Group | User | Last name | First name |
| mach | machanal | joaquin | Joaqui | Rilling |
| mach | machanal | so | So | Fujiyoshi |
| mach | machanal | mickey | Mikihiko | Kawai |
| ao | name_ao | kei | Kei | Yoshimura |
| ao | name_ao | fumiaki | Fumiaki | Morimoto |
| ao | name_ao | xiaojun | Xiaojun | name |
For directories of tools and public databases of biological data
| Path | Permission | Purpose | Size |
| /bio | 775 (bioadmin-bioadmin) | | 25TB |
| /bio/bin | | | |
| /bio/package | | | |
| /bio/package/<tool>/<version> | | | |
| /bio/db | | | |
| Group | Assigned user |
| machanal | joaquin |
| machanal | so |
| machanal | mickey |
| machanal | fumito |
| machanal | satoshi |
| machanal | kyoko |
| machanal | shoko |
| fuse | joaquin |
| fuse | so |
| fuse | mickey |
| Path | Permission | Purpose |
| /data/ | 775 (root-research) | |
| /data/<project>/ | 2770 (<project>-research) | To keep data shared among users of the project |
| /data/<project>/<user>/ | 2750 | To keep data analyzed by the user of the project |
* /data can be other path, for example, /home/proj * <user> belongs to a group, of which name for the <project> may be simply the same as <project>, but can be different.
List of projects
| Project | Group | User |
| mach | machanal | joaquin |
| mach | machanal | so |
| mach | machanal | mickey |
For directories of tools and public databases of biological data
| Path | Permission | Purpose | Size |
| /bio | 775 (bioadmin-bioadmin) | | 25TB |
| /bio/bin | | | |
| /bio/db | | | |
| /bio/package | | | |
| /bio/package/<tool>/<version> | | | |
| Priority | Group name of priviledge | Purpose | Note | |
| High | mach | Usage for MACH project by the project members. | Distribute evenly among users (e.g. for biological analysis and for simulation) (by ticket, nice value etc. on SLURM) | |
| machcolab | Coollaborative studies by MACH members | | | |
| ufro-internal | Need to submit user form (e.g. Name, affiliation, purpose of usage, desired account if any) | | |
| Low | external | Need to submit user form (e.g. Name, affiliation, purpose of usage, desired account if any) | | |
| | Disk quote per user |
| default | 500GB |
| Queue name | Duration of one job | Memory per job | | |
| small | 6hr | | medium | 72hr |
| Group of priviledge | Number of simultaneous jobs | | | |
| default | e.g. 30? | | | |
Submit an application form if one wants to request large resources, say, storage, memory per queue, number of similutaneously running queues/cpu.
MACH Meeting about soroban