Differences

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--- namespace:doc-mach:soroban [2020/05/19 02:28]
mickey [Directory organization for shared data]
+++ namespace:doc-mach:soroban [2024/09/16 17:58] (current)
@@ Line 1: / Line 1: @@
+====== Internal page for MACH project members ======
+======   ======
+[[:namespace:doc-mach:installed-software|List of software installed on soroban]]
+[[:namespace:doc-mach:usage-soroban|Usage of 'soroban' server for non-MACH users]]
+===== Directories for data shared among members of project MACH =====
+==== Directory organization for shared data ====
+  * /bio/db
+      * Public biological sequence and related data.
+  * /data/mach/<user>
+      * Data by project MACH will be kept under
+      * <user> is a person who put the data / did the analysis.
+      * How MiSeq raw read data and analyzed data are organized will be desided among the users of the project.
+==== Procedure to use /data/mach/<user> ====
+<code>
+cd /data/mach
+mkdir <user> #e.g. mkdir mickey
+</code>
+==== Groups of priviledges ====
+|**Priority** |**Group name of priviledge** |**Purpose** |**Note** |
+|High|mach|Usage for MACH project by the project members.|Distribute evenly among users (e.g. for biological analysis and for simulation) (by ticket, nice value etc. on SLURM)|
+|machcolab|Coollaborative studies by MACH members| | | |
+|ufro-internal||Need to submit user form (e.g. Name, affiliation, purpose of usage, desired account if any)| | |
+|Low|external|Need to submit user form (e.g. Name, affiliation, purpose of usage, desired account if any)|
+===== Limitation of initial resources for default user account =====
+|**Queue name** |**Duration of one job** |**Memory per job** |
+|small|6hr| |medium|72hr|
+|**Group of priviledge** |**Number of simultaneous jobs** | | | |
+|default|e.g. 30?| | |
+Submit an application form if one wants to request large resources, say, storage, memory per queue, number of similutaneously running queues/cpu.
+\\