WIKI CEMCC namespace:doc-mach

namespace:doc-mach:acknowledgement-soroban

Anonymous (anonymous@undisclosed.example.com) — 2024-09-16T17:58:01-0300

How to write acknowledgments in your paper When publishing research results using this system in a paper, etc., we request that you state that this system was used in the section of the acknowledgment, etc. See below for the example statement of acknowledgment in English.

namespace:doc-mach:application-soroban

Anonymous (anonymous@undisclosed.example.com) — 2024-09-16T17:58:01-0300

Please submit an application for using the biological information analysis system ('soroban'(#) server). [Form of application] Submission address: By email xxxccmcc.ac.jp (Please make the mark to at mark)

namespace:doc-mach:course-bioinfo2020

Anonymous (anonymous@undisclosed.example.com) — 2024-09-16T17:58:01-0300

Sandbox of 'Course of Genome Bioinformatics 2020' Preparation of 'Course of Genome Bioinformatics 2020' List of software installed on soroban Usage of 'soroban' server

namespace:doc-mach:installed-software

Anonymous (anonymous@undisclosed.example.com) — 2024-09-16T17:58:01-0300

Note Each tool becomes available by 'module load /'. Those who want to use these tools, contact (e-mail: ) to enable modules available. module avail # List all available modules. module list # Modules loaded at present. # Without module load, blastn is not available. blastn -version #-bash: blastn: command not found # Enable blast+, version 2.10.0 module load blast+/2.10.0 # After module load, blastn becomes available. blastn -version #blastn: 2.10.0+ # Disable a tool mod…

namespace:doc-mach:preparation-course-bioinfo2020

Anonymous (anonymous@undisclosed.example.com) — 2024-09-16T17:58:01-0300

Review after the course MK20200117 * Misunderstanding of technical term * Metagenome != microbiome analysis by targeted amplicon sequencing (amplicon analysis of rRNA gene; meta16S/18S; community analysis) * Metagenome = ‘meta’ + ‘genome’; Genome = ‘gen’ + ‘ome’

namespace:doc-mach:report-soroban

Anonymous (anonymous@undisclosed.example.com) — 2024-09-16T17:58:01-0300

Request for report submission (end of each fiscal year) Please cooperate with the usage report submission In the Information Management and Analysis Office, users are required to submit a usage report at the end of the fiscal year to accurately grasp the usage status of the biological information analysis system.

namespace:doc-mach:rule-soroban

Anonymous (anonymous@undisclosed.example.com) — 2024-09-16T17:58:01-0300

“soroban”server) “”“CMCC”), University of La Frontera (hereinafter referred to as“UFRO”), Chile. “in-house user”). “project user”). “out-of-office users”), submit an application for out-of-office users every year. For in-house users and project users, submit a continuation application form when using beyond the year.

namespace:doc-mach:sandbox-course-bioinfo2020

Anonymous (anonymous@undisclosed.example.com) — 2024-09-16T17:58:01-0300

This is sandbox for members of 'Course of Genome Bioinformatics 2020'. FAQs Attach a file in a page 1. Upper right, tool icon, select Media Manager 2. On the Media Manager page, Upload tab, select name space doc-mach from the left page (root - namespace - doc-mach)

namespace:doc-mach:sandbox-mach

Anonymous (anonymous@undisclosed.example.com) — 2024-09-16T17:58:01-0300

This is a page for sandbox. Now MK writes this. Course of Genome Bioinformatics 2020 [Test PDF file] [Test PDF file] Course of Genome Bioinformatics 2020

namespace:doc-mach:soroban

Anonymous (anonymous@undisclosed.example.com) — 2024-09-16T17:58:01-0300

Internal page for MACH project members List of software installed on soroban Usage of 'soroban' server for non-MACH users Directories for data shared among members of project MACH Directory organization for shared data * /bio/db * Public biological sequence and related data. * /data/mach/ * Data by project MACH will be kept under

namespace:doc-mach:termination-soroban

Anonymous (anonymous@undisclosed.example.com) — 2024-09-16T17:58:01-0300

When you terminate the use When you have finished using the system, please note this in your year-end report. Please copy the necessary data from the server to your local computer before notifying the end. Your account will be frozen immediately and you will not be able to log in.

namespace:doc-mach:usage-soroban

Anonymous (anonymous@undisclosed.example.com) — 2024-09-16T17:58:01-0300

* Application for use * Report (every year) * About acknowledgement in your paper * Rule of use * Termination of use