software_bioinformatics [WIKI CEMCC]

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====== Software y librerías disponibles ======

Bioinformatics, Chemistry, Physics, etc

índice : A|B|C|D|E|F|G|H|I|J|K|L|M|N|O|P|Q|R|S|T|U|V|W|X|Y|Z

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| \\ **#** | \\ **Aplicación** | \\ **Versión** | \\ **Descripción** |
|**A** | | | |
|**B** | | | |
| |bcftools|1.8|Set of utilities for variant calling and manipulation of variant call format (VCF) files in genomics research.|
|**C** | | | |
| |cmake|3.15.4|Cross-platform build system generator, widely used for managing the build process of software projects.|
| |cmake|3.20.6|Cross-platform build system generator, widely used for managing the build process of software projects.|
|**D** | | | |
|**E** | | | |
|**F** | | | |
| |fftw|3.3.10|FFTW (Fastest Fourier Transform in the West) is a highly efficient library for computing discrete Fourier transforms.|
|**G** | | | |
| |gromacs|2019.4-fftw-3.3.10-openmpi-4.1.1|Molecular dynamics simulation software widely used for biomolecular studies.|
| |gromacs|2024.1-fftw-3.3.10-openmpi-4.1.6|Molecular dynamics simulation software widely used for biomolecular studies.|
|**H** | | | |
|**I** | | | |
|**J** | | | |
|**K** | | | |
|**L** | | | |
|**M** | | | |
|**N** | | | |
|**O** | | | |
| |openfoam|5.0|Open-source computational fluid dynamics (CFD) software package for simulating complex fluid flows.|
| |openmpi|4.1.1|Open-source implementation of the Message Passing Interface (MPI) standard for parallel computing, enabling efficient communication among distributed processes.|
| |openmpi|4.1.6|Open-source implementation of the Message Passing Interface (MPI) standard for parallel computing, enabling efficient communication among distributed processes.|
|**P** | | | |
| |python|3.12.1|High-level programming language, widely used for scripting, web development, data analysis, and more.|
|**Q** | | | |
|**R** | | | |
|**S** | | | |
| |samtools|1.9|Suite of programs for interacting with high-throughput sequencing data|
| |singularity|4.1.0|Containerization platform designed for HPC environments, facilitating reproducibility and portability of software stacks.|
|**T** | | | |
| |tabix|0.2.5|Tool for indexing and querying large tab-delimited text files, commonly used in genomics research for efficient retrieval of specific genomic regions.|
|**U** | | | |
|**V** | | | |
|**W** | | | |
|**X** | | | |
|**Y** | | | |
|**Z** | | | |
| |zlib|1.2.13|A versatile compression library for data compression and decompression.|