namespace:doc-mach:soroban [WIKI CEMCC]

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====== Internal page for MACH project members ======

======   ======

[[:namespace:doc-mach:installed-software|List of software installed on soroban]]

[[:namespace:doc-mach:usage-soroban|Usage of 'soroban' server for non-MACH users]]

===== Directories for data shared among members of project MACH =====

==== Directory organization for shared data ====

  * /bio/db
      * Public biological sequence and related data.
  * /data/mach/<user>
      * Data by project MACH will be kept under
      * <user> is a person who put the data / did the analysis.
      * How MiSeq raw read data and analyzed data are organized will be desided among the users of the project.


==== Procedure to use /data/mach/<user> ====

<code>
cd /data/mach
mkdir <user> #e.g. mkdir mickey
</code>



==== Groups of priviledges ====
|**Priority** |**Group name of priviledge** |**Purpose** |**Note** |
|High|mach|Usage for MACH project by the project members.|Distribute evenly among users (e.g. for biological analysis and for simulation) (by ticket, nice value etc. on SLURM)| 
|machcolab|Coollaborative studies by MACH members| | | | 
|ufro-internal||Need to submit user form (e.g. Name, affiliation, purpose of usage, desired account if any)| | | 
|Low|external|Need to submit user form (e.g. Name, affiliation, purpose of usage, desired account if any)|  
 
===== Limitation of initial resources for default user account =====
|**Queue name** |**Duration of one job** |**Memory per job** |
|small|6hr| |medium|72hr| 

|**Group of priviledge** |**Number of simultaneous jobs** | | | |
|default|e.g. 30?| | |

Submit an application form if one wants to request large resources, say, storage, memory per queue, number of similutaneously running queues/cpu.

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