namespace:doc-mach:installed-software [WIKI CEMCC]

Each tool becomes available by 'module load <tool>/<version>'.

Those who want to use these tools, contact (e-mail: ) to enable modules available.

module avail
# List all available modules.

module list
# Modules loaded at present.

# Without module load, blastn is not available.
blastn -version
#-bash: blastn: command not found

# Enable blast+, version 2.10.0
module load blast+/2.10.0

# After module load, blastn becomes available.
blastn -version
#blastn: 2.10.0+

# Disable a tool
module unload blast+/2.10.0

# Disable all presently loaded modules
module purge

Note

aragorn/1.2.38

arb/6.0.6

ascp/3.9.9

bamtools/2.5.1

barrnap/0.9

bbtools/38.86

bcftools/1.10.2

beagle-lib/3.1.2

bedops/2.4.38

bedtools/2.29.2

blast/2.2.26

blast+/2.10.0(default)

blast+/2.9.0

boost/1.73.0

bowtie2/2.4.1

bwa/0.7.17

canu/1.9

canu/2.0

cdhit/4.8.1

checkm/1.1.2

circos/0.69-9

cpanm/1.7044

cufflinks/2.2.1

cutadapt/2.10

diamond/0.9.35

eggnog-mapper/2.0.1

EMBOSS/6.6.0

FastANI/1.3

fastqc/0.11.9

fasttree/2.1.11

Gblocks/0.91b

go/1.14.4

gtdbtk/1.2.0

hmmer/2.3.2

hmmer/3.1b1

hmmer/3.1b2

hmmer/3.2.1

hmmer/3.3

htslib/1.10.2

infernal/1.1.3

jdk/11.28

jdk/14.0.1

jdk/8.0_41

jellyfish/2.3.0

kaiju/1.7.3

krona/2.7.1

ksnp/3.1.2

mafft/7.470

mash/2.2

MCL/14-137

MinCED/0.4.2

miniconda/4.8.3

minimap2/2.17

mothur/1.44.1

MUMmer/3.23

muscle/3.8.31

ncftp/3.2.6

paml/4.9j

parallel/20200622

phylip/3.697

phyml/3.3.20190909

picard/2.23.1

pilon/1.23

pplacer/1.1.alpha17

prank/170427

prinseq/0.20.4

prodigal/2.6.3

prokka/1.14.6

pyani/0.2.10

python/3.7.6.bio

quast/5.1.0rc1

racon/1.4.16

roary/1.7.7

RSEM/1.3.3

salmon/1.2.1

samtools/1.10.2

seqkit/0.12.1

seqtk/1.3

SINA/1.6.1