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--- namespace:doc-mach:installed-software [2020/01/15 18:06]
mickey
+++ namespace:doc-mach:installed-software [2024/09/16 17:58] (current)
@@ Line 1: / Line 1: @@
+==== Note ====
+Each tool becomes available by 'module load <tool>/<version>'.
+Those who want to use these tools, contact (e-mail: ) to enable modules available.
+<code>
+module avail
+# List all available modules.
+module list
+# Modules loaded at present.
+# Without module load, blastn is not available.
+blastn -version
+#-bash: blastn: command not found
+# Enable blast+, version 2.10.0
+module load blast+/2.10.0
+# After module load, blastn becomes available.
+blastn -version
+#blastn: 2.10.0+
+# Disable a tool
+module unload blast+/2.10.0
+# Disable all presently loaded modules
+module purge
+</code>
+==== aragorn/1.2.38 ====
+==== arb/6.0.6 ====
+==== ascp/3.9.9 ====
+==== bamtools/2.5.1 ====
+==== barrnap/0.9 ====
+==== bbtools/38.86 ====
+==== bcftools/1.10.2 ====
+==== beagle-lib/3.1.2 ====
+==== bedops/2.4.38 ====
+==== bedtools/2.29.2 ====
+==== blast/2.2.26 ====
+==== blast+/2.10.0(default) ====
+==== blast+/2.9.0 ====
+==== boost/1.73.0 ====
+==== bowtie2/2.4.1 ====
+==== bwa/0.7.17 ====
+==== canu/1.9 ====
+==== canu/2.0 ====
+==== cdhit/4.8.1 ====
+==== checkm/1.1.2 ====
+==== circos/0.69-9 ====
+==== cpanm/1.7044 ====
+==== cufflinks/2.2.1 ====
+==== cutadapt/2.10 ====
+==== diamond/0.9.35 ====
+==== eggnog-mapper/2.0.1 ====
+==== EMBOSS/6.6.0 ====
+==== FastANI/1.3 ====
+==== fastqc/0.11.9 ====
+==== fasttree/2.1.11 ====
+==== Gblocks/0.91b ====
+==== go/1.14.4 ====
+==== gtdbtk/1.2.0 ====
+==== hmmer/2.3.2 ====
+==== hmmer/3.1b1 ====
+==== hmmer/3.1b2 ====
+==== hmmer/3.2.1 ====
+==== hmmer/3.3 ====
+==== htslib/1.10.2 ====
+==== infernal/1.1.3 ====
+==== jdk/11.28 ====
+==== jdk/14.0.1 ====
+==== jdk/8.0_41 ====
+==== jellyfish/2.3.0 ====
+==== kaiju/1.7.3 ====
+==== krona/2.7.1 ====
+==== ksnp/3.1.2 ====
+==== mafft/7.470 ====
+==== mash/2.2 ====
+==== MCL/14-137 ====
+==== MinCED/0.4.2 ====
+==== miniconda/4.8.3 ====
+==== minimap2/2.17 ====
+==== mothur/1.44.1 ====
+==== MUMmer/3.23 ====
+==== muscle/3.8.31 ====
+==== ncftp/3.2.6 ====
+==== paml/4.9j ====
+==== parallel/20200622 ====
+==== phylip/3.697 ====
+==== phyml/3.3.20190909 ====
+==== picard/2.23.1 ====
+==== pilon/1.23 ====
+==== pplacer/1.1.alpha17 ====
+==== prank/170427 ====
+==== prinseq/0.20.4 ====
+==== prodigal/2.6.3 ====
+==== prokka/1.14.6 ====
+==== pyani/0.2.10 ====
+==== python/3.7.6.bio ====
+==== quast/5.1.0rc1 ====
+==== racon/1.4.16 ====
+==== roary/1.7.7 ====
+==== RSEM/1.3.3 ====
+==== salmon/1.2.1 ====
+==== samtools/1.10.2 ====
+==== seqkit/0.12.1 ====
+==== seqtk/1.3 ====
+==== SINA/1.6.1 ====
+==== SPAdes/3.13.2 ====
+==== SPAdes/3.14.1 ====
+==== sratoolkit/2.10.7 ====
+==== ssu-align/0.1.1 ====
+==== tbl2asn/3.10.0 ====
+==== tophat/2.1.1 ====
+==== TransDecoder/5.5.0 ====
+==== trf/4.09 ====
+==== trinityrnaseq/2.11.0 ====
+==== tRNAscan-SE/2.0.5 ====
+==== Unicycler/0.4.9b ====
+==== vcftools/0.1.17 ====